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@yzhao062 yzhao062 commented Aug 4, 2020

All Submissions Basics:

  • Have you followed the guidelines in our Contributing document?
  • Have you checked to ensure there aren't other open Pull Requests for the same update/change?
  • Have you checked all Issues to tie the PR to a specific one?

All Submissions Cores:

  • Have you added an explanation of what your changes do and why you'd like us to include them?
  • Have you written new tests for your core changes, as applicable?
  • Have you successfully ran tests with your changes locally?
  • Does your submission pass tests, including CircleCI, Travis CI, and AppVeyor?
  • Does your submission have appropriate code coverage? The cutoff threshold is 95% by Coversall.

New Model Submissions:

  • Have you created a .py in ~/pyhealth/models/?
  • Have you created a _example.py in ~/examples/?
  • Have you created a test_.py in ~/pyhealth/test/?
  • Have you lint your code locally prior to submission?

@yzhao062 yzhao062 merged commit d9761ef into master Aug 4, 2020
zzachw added a commit that referenced this pull request Oct 22, 2022
Reorganize file structure
BPDanek added a commit that referenced this pull request Feb 24, 2023
github actions + rename tests
ycq091044 added a commit that referenced this pull request Feb 24, 2023
…thub actions (#104)

* Add repr class methods for InnerMap and CrossMap (#69)

* add repr methods for medcode maps, getters for CrossMap dom/codom

* fix: fuller repr & remove redundant getter

* add back test stub

* feat: Add eICU tests; make default params for Event

* feat: EHR stat test class

* update eicu unittest ROOT

* use pandas.Timestamp instead of datetime

* Create python-package.yml

* Delete python-package.yml

* feat: Github actions integration for test (#1)

github actions + rename tests

* Bdanek/test artifact (#2)

* feat: Github actions integration for test

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* add root to path so we resolve to local pyhealth

* feat: log pickled datasets

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* print path

* print filepath

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* attempt to use dawidd6/action-download-artifact@v2

* remove recursive ls

* re-trigger workflow

* add workflow id and run id

* cannot use branch with pr

* validate artifact download

* output whether local is used or no

* cache validation

* ls

* display hidden dir as well

* ls -al

* debugging directories

* deeper

* even deeper

* printing

* better dir

* restart

* remove bad artifacts

* use pr as artifact root

* small change to test pr event trigger + artifact

* feat: Add make artifact path

* run tests if artifact download fails

* conditional ls

* restart

* remove artifact handling

* manual workflow

* rename

* Bdanek/base dataset test (#3)

* feat: Add eICU tests; make default params for Event

* feat: EHR stat test class

* update eicu unittest ROOT

* use pandas.Timestamp instead of datetime

---------

Co-authored-by: ycq091044 <ycqsjtu@gmail.com>

* add test_omop

* data issues

* add dataset_name and refresh_cache to prevent issue

---------

Co-authored-by: Chaoqi Yang <ycqsjtu@gmail.com>
BPDanek added a commit that referenced this pull request Apr 22, 2023
…thub actions (#104)

* Add repr class methods for InnerMap and CrossMap (#69)

* add repr methods for medcode maps, getters for CrossMap dom/codom

* fix: fuller repr & remove redundant getter

* add back test stub

* feat: Add eICU tests; make default params for Event

* feat: EHR stat test class

* update eicu unittest ROOT

* use pandas.Timestamp instead of datetime

* Create python-package.yml

* Delete python-package.yml

* feat: Github actions integration for test (#1)

github actions + rename tests

* Bdanek/test artifact (#2)

* feat: Github actions integration for test

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* add root to path so we resolve to local pyhealth

* feat: log pickled datasets

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* print path

* print filepath

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* attempt to use dawidd6/action-download-artifact@v2

* remove recursive ls

* re-trigger workflow

* add workflow id and run id

* cannot use branch with pr

* validate artifact download

* output whether local is used or no

* cache validation

* ls

* display hidden dir as well

* ls -al

* debugging directories

* deeper

* even deeper

* printing

* better dir

* restart

* remove bad artifacts

* use pr as artifact root

* small change to test pr event trigger + artifact

* feat: Add make artifact path

* run tests if artifact download fails

* conditional ls

* restart

* remove artifact handling

* manual workflow

* rename

* Bdanek/base dataset test (#3)

* feat: Add eICU tests; make default params for Event

* feat: EHR stat test class

* update eicu unittest ROOT

* use pandas.Timestamp instead of datetime

---------

Co-authored-by: ycq091044 <ycqsjtu@gmail.com>

* add test_omop

* data issues

* add dataset_name and refresh_cache to prevent issue

---------

Co-authored-by: Chaoqi Yang <ycqsjtu@gmail.com>
LaErre9 added a commit to LaErre9/PyHealth that referenced this pull request Nov 7, 2023
LaErre9 added a commit to LaErre9/PyHealth that referenced this pull request Nov 7, 2023
LaErre9 added a commit to LaErre9/PyHealth that referenced this pull request Nov 9, 2023
dalloliogm pushed a commit to dalloliogm/PyHealth that referenced this pull request Nov 26, 2025
dalloliogm pushed a commit to dalloliogm/PyHealth that referenced this pull request Nov 26, 2025
dalloliogm pushed a commit to dalloliogm/PyHealth that referenced this pull request Nov 26, 2025
…thub actions (sunlabuiuc#104)

* Add repr class methods for InnerMap and CrossMap (sunlabuiuc#69)

* add repr methods for medcode maps, getters for CrossMap dom/codom

* fix: fuller repr & remove redundant getter

* add back test stub

* feat: Add eICU tests; make default params for Event

* feat: EHR stat test class

* update eicu unittest ROOT

* use pandas.Timestamp instead of datetime

* Create python-package.yml

* Delete python-package.yml

* feat: Github actions integration for test (sunlabuiuc#1)

github actions + rename tests

* Bdanek/test artifact (sunlabuiuc#2)

* feat: Github actions integration for test

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* add root to path so we resolve to local pyhealth

* feat: log pickled datasets

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* print path

* print filepath

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* Update run-unit-tests.yml

* attempt to use dawidd6/action-download-artifact@v2

* remove recursive ls

* re-trigger workflow

* add workflow id and run id

* cannot use branch with pr

* validate artifact download

* output whether local is used or no

* cache validation

* ls

* display hidden dir as well

* ls -al

* debugging directories

* deeper

* even deeper

* printing

* better dir

* restart

* remove bad artifacts

* use pr as artifact root

* small change to test pr event trigger + artifact

* feat: Add make artifact path

* run tests if artifact download fails

* conditional ls

* restart

* remove artifact handling

* manual workflow

* rename

* Bdanek/base dataset test (sunlabuiuc#3)

* feat: Add eICU tests; make default params for Event

* feat: EHR stat test class

* update eicu unittest ROOT

* use pandas.Timestamp instead of datetime

---------

Co-authored-by: ycq091044 <ycqsjtu@gmail.com>

* add test_omop

* data issues

* add dataset_name and refresh_cache to prevent issue

---------

Co-authored-by: Chaoqi Yang <ycqsjtu@gmail.com>
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